NEURON Course Exercises
These exercises are adapted from the 2018 NEURON summer course given in Atlanta, Georgia.
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- Lipid bilayer model
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- Squid axon model
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- Constructing a ball and stick model, saving session files
Working with Morphometric Data
- The Import3D tool
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- Single compartment model with HHk mechanism
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- Neuroinformatics tools for finding and understanding models
Introduction to the Linear Circuit Builder
- A two-electrode voltage clamp
Batch runs with bulletin board parallelization
- Speed up embarrassingly parallel tasks
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- Introduction to the HOC programming language
Networks: discrete event simulations with artificial cells
- Introduction to the Network Builder
Networks: continuous simulation of nets with biophysical model cells
- Network ready cells from the CellBuilder
Hopfield-Brody network in Python
MPI Parallelization