NEURON
8.2.0
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Programmatic Model Specification
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NEURON
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Programmatic Model Specification
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Programmatic Model Specification
Topology
Conceptual Overview of Sections
Geometry
Defining the 3D Shape
Reading 3D Data from NEURON
Section and Segment Selection
Dot notation for properties
sec= for functions
Default section
SectionList
SectionRef
Ions
Dynamics (Channels, etc…)
HOC-based Mechanisms
KSChan
LinearMechanism
Point Processes and Artificial Cells
General
Mechanisms
NMODL
NEURON Extension to NMODL
Model Description Language
Basic Reaction-Diffusion
Overview
Related resources
Specifying the domain
Intracellular regions and regions in Frankenhauser-Hodgkin space
Extracellular regions
Defining proteins, ions, etc
Defining reactions
Mathematical functions for rate expressions
Manipulating nodes
Membrane potential
Synchronization with segments
Numerical options
SBML Export
Saving and restoring state
Error handling
Networks
ParallelContext
Implementation Notes
MPI
SubWorld
Parallel Network
Parallel Transfer
ParallelNetManager
NetCon
Electrode
MechanismType
StateTransitionEvent
Obsolete Stimuli
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v: 8.2.0
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