NEURON
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Building:

  • Installation
  • CMake Build Options
  • Developer Builds

User documentation:

  • NEURON Python documentation
    • Quick Links
    • Basic Programming
    • Model Specification
      • Model Specification GUI Tools
      • Programmatic Model Specification
        • Topology
        • Ions
        • Dynamics (Channels, etc…)
        • Basic Reaction-Diffusion
        • Networks
        • Electrode
        • MechanismType
        • Obsolete Stimuli
    • Simulation Control
    • Visualization
    • Analysis
  • NEURON HOC documentation
  • Python tutorials
  • Python RXD tutorials
  • How to use CoreNEURON

Developer documentation:

  • NEURON SCM and Release
  • NEURON Development topics
  • C/C++ API

Changelog

  • 8.0.0
NEURON
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  • NEURON Python documentation »
  • Programmatic Model Specification
  • Switch to HOC
  • Edit on GitHub

Programmatic Model Specification¶

  • Topology
    • Conceptual Overview of Sections
      • Geometry
    • Defining the 3D Shape
    • Reading 3D Data from NEURON
    • Section and Segment Selection
      • Dot notation for properties
      • sec= for functions
      • Default section
    • SectionList
    • SectionRef
  • Ions
  • Dynamics (Channels, etc…)
    • HOC-based Mechanisms
    • KSChan
    • LinearMechanism
    • Point Processes and Artificial Cells
      • General
    • Mechanisms
    • NMODL
      • NEURON Extension to NMODL
      • Model Description Language
  • Basic Reaction-Diffusion
  • Networks
    • ParallelContext
      • Implementation Notes
      • MPI
      • SubWorld
      • Parallel Network
      • Parallel Transfer
    • ParallelNetManager
    • NetCon
  • Electrode
  • MechanismType
  • Obsolete Stimuli
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